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not able to install bioconductor packages
package
bioconductor
new version
7.2 years ago
farahqureshi5
• 0
0
votes
2
replies
3.4k
views
DESeqDataSetFromMatrix Unavailable for R Version 3.5.0
DESeq2
deseqdatasetfrommatrix
r
new version
updated 5.7 years ago by
Michael Love
41k • written 5.7 years ago by
megannj
• 0
2
votes
2
replies
1.4k
views
Target version of R for Bioconductor 3.1?
new version
9.2 years ago
David Eby
▴ 30
1
vote
4
replies
1.3k
views
DiifBind version difference
diffbind
new version
updated 8.9 years ago by
Rory Stark
★ 5.2k • written 8.9 years ago by
pkra
• 0
1
vote
1
reply
1.2k
views
Agilent BiomaRT getBM unavailable filter value
biomaRT
getBM
new version
updated 7.4 years ago by
James W. MacDonald
65k • written 7.4 years ago by
u.seemab
• 0
3
votes
2
replies
1.1k
views
DESeq2: Question regarding changes between Bioconductor 3.2 and 3.4 or recent version changes
deseq2
new version
bioconductor
software error
reproducibility
7.5 years ago
Daniel Elsner
• 0
0
votes
1
reply
1.1k
views
New Version of DexSEQ
upgrade
new version
backwards compatibility
updated 9.2 years ago by
Steve Lianoglou
★ 13k • written 9.2 years ago by
jrdemasi
• 0
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Answer: Dominance Index for Shotgun Metagenomics Data
by
Leo Lahti
▴ 40
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
pl23
• 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions
by
Michael Love
41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
by
ussarizona
▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative?
by
Michael Love
41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Votes
Answer: Dominance Index for Shotgun Metagenomics Data
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
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